J5_3JAI_006

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

3JAI|1|9|A|590, 3JAI|1|9|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAI|1|9|C|30
3JAI|1|9|U|31
3JAI|1|9|U|32
3JAI|1|9|G|33
3JAI|1|9|U|34
*
3JAI|1|9|A|521
3JAI|1|9|A|522
3JAI|1|9|A|523
3JAI|1|9|U|524
3JAI|1|9|A|525
3JAI|1|9|A|526
3JAI|1|9|C|527
*
3JAI|1|9|G|558
3JAI|1|9|G|559
3JAI|1|9|A|560
3JAI|1|9|A|561
3JAI|1|9|U|562
3JAI|1|9|G|563
3JAI|1|9|A|564
3JAI|1|9|G|565
*
3JAI|1|9|C|585
3JAI|1|9|G|586
3JAI|1|9|A|587
3JAI|1|9|G|588
3JAI|1|9|G|589
3JAI|1|9|A|590
3JAI|1|9|U|591
3JAI|1|9|C|592
3JAI|1|9|C|593
3JAI|1|9|A|594
3JAI|1|9|U|595
*
3JAI|1|9|A|641
3JAI|1|9|U|642
3JAI|1|9|A|643
3JAI|1|9|G|644

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12

Chain ee

eS30