J5_3JAI_010

3D structure

PDB id

3JAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

UCGCCACUU*AUGCCGACGGG*UGCAUU*ACCUCGGGCCGAU*ACGA

Length

43 nucleotides

Bulged bases

3JAI|1|9|G|126, 3JAI|1|9|C|139, 3JAI|1|9|C|142, 3JAI|1|9|G|183, 3JAI|1|9|G|215, 3JAI|1|9|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAI|1|9|U|124
3JAI|1|9|C|125
3JAI|1|9|G|126
3JAI|1|9|C|139
3JAI|1|9|C|140
3JAI|1|9|A|141
3JAI|1|9|C|142
3JAI|1|9|U|143
3JAI|1|9|U|144
*
3JAI|1|9|A|175
3JAI|1|9|U|176
3JAI|1|9|G|177
3JAI|1|9|C|178
3JAI|1|9|C|179
3JAI|1|9|G|180
3JAI|1|9|A|181
3JAI|1|9|C|182
3JAI|1|9|G|183
3JAI|1|9|G|184
3JAI|1|9|G|185
*
3JAI|1|9|U|214
3JAI|1|9|G|215
3JAI|1|9|C|216
3JAI|1|9|A|217
3JAI|1|9|U|218
3JAI|1|9|U|219
*
3JAI|1|9|A|302
3JAI|1|9|C|303
3JAI|1|9|C|304
3JAI|1|9|U|305
3JAI|1|9|C|306
3JAI|1|9|G|307
3JAI|1|9|G|308
3JAI|1|9|G|309
3JAI|1|9|C|310
3JAI|1|9|C|311
3JAI|1|9|G|312
3JAI|1|9|A|313
3JAI|1|9|U|314
*
3JAI|1|9|A|336
3JAI|1|9|C|337
3JAI|1|9|G|338
3JAI|1|9|A|339

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain GG

eS6

Chain II

eS8