J5_3JAJ_006
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 3JAJ|1|5|C|2856, 3JAJ|1|5|G|3620, 3JAJ|1|5|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JAJ_006 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1936
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAJ|1|5|G|2855
3JAJ|1|5|C|2856
3JAJ|1|5|A|2857
3JAJ|1|5|A|2858
3JAJ|1|5|G|2859
3JAJ|1|5|C|2860
3JAJ|1|5|C|2861
3JAJ|1|5|G|2862
3JAJ|1|5|G|2863
*
3JAJ|1|5|U|2887
3JAJ|1|5|G|2888
*
3JAJ|1|5|U|3613
3JAJ|1|5|G|3614
*
3JAJ|1|5|C|3618
3JAJ|1|5|G|3619
3JAJ|1|5|G|3620
3JAJ|1|5|A|3621
3JAJ|1|5|C|3622
3JAJ|1|5|C|3623
3JAJ|1|5|A|3624
3JAJ|1|5|G|3625
3JAJ|1|5|G|3626
*
3JAJ|1|5|C|3835
3JAJ|1|5|A|3836
3JAJ|1|5|C|3837
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein uL3
- Chain R
- Ribosomal protein eL19
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain V
- Ribosomal protein uL14
- Chain W
- Ribosomal protein eL24
Coloring options: