J5_3JAJ_010
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAUU*AUAG
- Length
- 36 nucleotides
- Bulged bases
- 3JAJ|1|S2|A|590, 3JAJ|1|S2|C|593
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAJ|1|S2|C|30
3JAJ|1|S2|U|31
3JAJ|1|S2|U|32
3JAJ|1|S2|G|33
3JAJ|1|S2|U|34
*
3JAJ|1|S2|A|521
3JAJ|1|S2|A|522
3JAJ|1|S2|A|523
3JAJ|1|S2|U|524
3JAJ|1|S2|A|525
3JAJ|1|S2|A|526
3JAJ|1|S2|C|527
*
3JAJ|1|S2|G|558
3JAJ|1|S2|G|559
3JAJ|1|S2|A|560
3JAJ|1|S2|A|561
3JAJ|1|S2|U|562
3JAJ|1|S2|G|563
3JAJ|1|S2|A|564
3JAJ|1|S2|G|565
*
3JAJ|1|S2|C|585
3JAJ|1|S2|G|586
3JAJ|1|S2|A|587
3JAJ|1|S2|G|588
3JAJ|1|S2|G|589
3JAJ|1|S2|A|590
3JAJ|1|S2|U|591
3JAJ|1|S2|C|592
3JAJ|1|S2|C|593
3JAJ|1|S2|A|594
3JAJ|1|S2|U|595
3JAJ|1|S2|U|596
*
3JAJ|1|S2|A|641
3JAJ|1|S2|U|642
3JAJ|1|S2|A|643
3JAJ|1|S2|G|644
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SJ
- Ribosomal protein uS4
- Chain SX
- Ribosomal protein uS12
- Chain SY
- Ribosomal protein eS24
- Chain Se
- Ribosomal protein eS30
Coloring options: