J5_3JAJ_011
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CAUGCAUGUCUAAG*CUGCGAAUGGC*GAG*CACAUC*GAAGGCAGCAG
- Length
- 45 nucleotides
- Bulged bases
- 3JAJ|1|S2|U|55, 3JAJ|1|S2|A|92
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAJ|1|S2|C|49
3JAJ|1|S2|A|50
3JAJ|1|S2|U|51
3JAJ|1|S2|G|52
3JAJ|1|S2|C|53
3JAJ|1|S2|A|54
3JAJ|1|S2|U|55
3JAJ|1|S2|G|56
3JAJ|1|S2|U|57
3JAJ|1|S2|C|58
3JAJ|1|S2|U|59
3JAJ|1|S2|A|60
3JAJ|1|S2|A|61
3JAJ|1|S2|G|62
*
3JAJ|1|S2|C|86
3JAJ|1|S2|U|87
3JAJ|1|S2|G|88
3JAJ|1|S2|C|89
3JAJ|1|S2|G|90
3JAJ|1|S2|A|91
3JAJ|1|S2|A|92
3JAJ|1|S2|U|93
3JAJ|1|S2|G|94
3JAJ|1|S2|G|95
3JAJ|1|S2|C|96
*
3JAJ|1|S2|G|434
3JAJ|1|S2|A|435
3JAJ|1|S2|G|436
*
3JAJ|1|S2|C|457
3JAJ|1|S2|A|458
3JAJ|1|S2|C|459
3JAJ|1|S2|A|460
3JAJ|1|S2|U|461
3JAJ|1|S2|C|462
*
3JAJ|1|S2|G|467
3JAJ|1|S2|A|468
3JAJ|1|S2|A|469
3JAJ|1|S2|G|470
3JAJ|1|S2|G|471
3JAJ|1|S2|C|472
3JAJ|1|S2|A|473
3JAJ|1|S2|G|474
3JAJ|1|S2|C|475
3JAJ|1|S2|A|476
3JAJ|1|S2|G|477
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain S1
- SRP9
- Chain S4
- SRP14
- Chain SE
- Ribosomal protein eS4
- Chain SG
- Ribosomal protein eS6
- Chain SI
- Ribosomal protein eS8
- Chain SJ
- Ribosomal protein uS4
- Chain SY
- Ribosomal protein eS24
- Chain V
- Ribosomal protein uL14
Coloring options: