J5_3JAJ_013
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- AUCUUGGGAGCG*CCCGCCG*CAUU*AUGGAAUAG*CAUGAU
- Length
- 38 nucleotides
- Bulged bases
- 3JAJ|1|S2|A|869, 3JAJ|1|S2|U|871, 3JAJ|1|S2|A|913, 3JAJ|1|S2|A|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAJ|1|S2|A|685
3JAJ|1|S2|U|686
3JAJ|1|S2|C|687
3JAJ|1|S2|U|688
3JAJ|1|S2|U|689
3JAJ|1|S2|G|690
3JAJ|1|S2|G|691
3JAJ|1|S2|G|692
3JAJ|1|S2|A|693
3JAJ|1|S2|G|694
3JAJ|1|S2|C|695
3JAJ|1|S2|G|696
*
3JAJ|1|S2|C|734
3JAJ|1|S2|C|735
3JAJ|1|S2|C|736
3JAJ|1|S2|G|737
3JAJ|1|S2|C|738
3JAJ|1|S2|C|739
3JAJ|1|S2|G|744
*
3JAJ|1|S2|C|797
3JAJ|1|S2|A|798
3JAJ|1|S2|U|799
3JAJ|1|S2|U|800
*
3JAJ|1|S2|A|865
3JAJ|1|S2|U|866
3JAJ|1|S2|G|867
3JAJ|1|S2|G|868
3JAJ|1|S2|A|869
3JAJ|1|S2|A|870
3JAJ|1|S2|U|871
3JAJ|1|S2|A|872
3JAJ|1|S2|G|873
*
3JAJ|1|S2|C|912
3JAJ|1|S2|A|913
3JAJ|1|S2|U|914
3JAJ|1|S2|G|915
3JAJ|1|S2|A|916
3JAJ|1|S2|U|917
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein eL19
- Chain SH
- Ribosomal protein eS7
- Chain SL
- Ribosomal protein uS17
- Chain SN
- Ribosomal protein uS15
- Chain SW
- Ribosomal protein uS8
- Chain SX
- Ribosomal protein uS12
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