J5_3JAJ_016
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GUAGUAGCAAAUAU*AGGCCGAAGUGGA*UCCAA*UCUGGCAUGUU*AGCGAAAC
- Length
- 51 nucleotides
- Bulged bases
- 3JAJ|1|5|A|2366, 3JAJ|1|5|U|2369, 3JAJ|1|5|A|2370, 3JAJ|1|5|A|2396, 3JAJ|1|5|U|2826, 3JAJ|1|5|U|2828
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JAJ|1|5|G|2358
3JAJ|1|5|U|2359
3JAJ|1|5|A|2360
3JAJ|1|5|G|2361
3JAJ|1|5|U|2362
3JAJ|1|5|A|2363
3JAJ|1|5|G|2364
3JAJ|1|5|C|2365
3JAJ|1|5|A|2366
3JAJ|1|5|A|2367
3JAJ|1|5|A|2368
3JAJ|1|5|U|2369
3JAJ|1|5|A|2370
3JAJ|1|5|U|2371
*
3JAJ|1|5|A|2389
3JAJ|1|5|G|2390
3JAJ|1|5|G|2391
3JAJ|1|5|C|2392
3JAJ|1|5|C|2393
3JAJ|1|5|G|2394
3JAJ|1|5|A|2395
3JAJ|1|5|A|2396
3JAJ|1|5|G|2397
3JAJ|1|5|U|2398
3JAJ|1|5|G|2399
3JAJ|1|5|G|2400
3JAJ|1|5|A|2401
*
3JAJ|1|5|U|2803
3JAJ|1|5|C|2804
3JAJ|1|5|C|2805
3JAJ|1|5|A|2806
3JAJ|1|5|A|2807
*
3JAJ|1|5|U|2819
3JAJ|1|5|C|2820
3JAJ|1|5|U|2821
3JAJ|1|5|G|2822
3JAJ|1|5|G|2823
3JAJ|1|5|C|2824
3JAJ|1|5|A|2825
3JAJ|1|5|U|2826
3JAJ|1|5|G|2827
3JAJ|1|5|U|2828
3JAJ|1|5|U|2829
*
3JAJ|1|5|A|3856
3JAJ|1|5|G|3857
3JAJ|1|5|C|3858
3JAJ|1|5|G|3859
3JAJ|1|5|A|3860
3JAJ|1|5|A|3861
3JAJ|1|5|A|3862
3JAJ|1|5|C|3863
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain P
- Ribosomal protein uL22
- Chain R
- Ribosomal protein eL19
- Chain d
- Ribosomal protein eL31
- Chain g
- Ribosomal protein eL34
- Chain j
- Ribosomal protein eL37
Coloring options: