J5_3JAJ_017

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGCUCGCUCCUCUCCCACUU*AUGCCGACGGGCG*CGUGCAU*ACCUCGGGCCGAUC*GACG

Length

58 nucleotides

Bulged bases

3JAJ|1|S2|U|128, 3JAJ|1|S2|C|129, 3JAJ|1|S2|G|130, 3JAJ|1|S2|C|131, 3JAJ|1|S2|U|132, 3JAJ|1|S2|C|133, 3JAJ|1|S2|C|134, 3JAJ|1|S2|U|135, 3JAJ|1|S2|C|136, 3JAJ|1|S2|U|137, 3JAJ|1|S2|C|138, 3JAJ|1|S2|C|139, 3JAJ|1|S2|C|142, 3JAJ|1|S2|G|183, 3JAJ|1|S2|G|215, 3JAJ|1|S2|U|305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAJ|1|S2|C|125
3JAJ|1|S2|G|126
3JAJ|1|S2|C|127
3JAJ|1|S2|U|128
3JAJ|1|S2|C|129
3JAJ|1|S2|G|130
3JAJ|1|S2|C|131
3JAJ|1|S2|U|132
3JAJ|1|S2|C|133
3JAJ|1|S2|C|134
3JAJ|1|S2|U|135
3JAJ|1|S2|C|136
3JAJ|1|S2|U|137
3JAJ|1|S2|C|138
3JAJ|1|S2|C|139
3JAJ|1|S2|C|140
3JAJ|1|S2|A|141
3JAJ|1|S2|C|142
3JAJ|1|S2|U|143
3JAJ|1|S2|U|144
*
3JAJ|1|S2|A|175
3JAJ|1|S2|U|176
3JAJ|1|S2|G|177
3JAJ|1|S2|C|178
3JAJ|1|S2|C|179
3JAJ|1|S2|G|180
3JAJ|1|S2|A|181
3JAJ|1|S2|C|182
3JAJ|1|S2|G|183
3JAJ|1|S2|G|184
3JAJ|1|S2|G|185
3JAJ|1|S2|C|186
3JAJ|1|S2|G|187
*
3JAJ|1|S2|C|212
3JAJ|1|S2|G|213
3JAJ|1|S2|U|214
3JAJ|1|S2|G|215
3JAJ|1|S2|C|216
3JAJ|1|S2|A|217
3JAJ|1|S2|U|218
*
3JAJ|1|S2|A|302
3JAJ|1|S2|C|303
3JAJ|1|S2|C|304
3JAJ|1|S2|U|305
3JAJ|1|S2|C|306
3JAJ|1|S2|G|307
3JAJ|1|S2|G|308
3JAJ|1|S2|G|309
3JAJ|1|S2|C|310
3JAJ|1|S2|C|311
3JAJ|1|S2|G|312
3JAJ|1|S2|A|313
3JAJ|1|S2|U|314
3JAJ|1|S2|C|315
*
3JAJ|1|S2|G|335
3JAJ|1|S2|A|336
3JAJ|1|S2|C|337
3JAJ|1|S2|G|338

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8