J5_3JAM_001

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAC*GUAG

Length

35 nucleotides

Bulged bases

3JAM|1|2|A|540, 3JAM|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAM|1|2|C|31
3JAM|1|2|U|32
3JAM|1|2|U|33
3JAM|1|2|G|34
3JAM|1|2|U|35
*
3JAM|1|2|A|472
3JAM|1|2|A|473
3JAM|1|2|A|474
3JAM|1|2|U|475
3JAM|1|2|A|476
3JAM|1|2|A|477
3JAM|1|2|C|478
*
3JAM|1|2|G|508
3JAM|1|2|G|509
3JAM|1|2|A|510
3JAM|1|2|A|511
3JAM|1|2|U|512
3JAM|1|2|G|513
3JAM|1|2|A|514
3JAM|1|2|G|515
*
3JAM|1|2|C|535
3JAM|1|2|G|536
3JAM|1|2|A|537
3JAM|1|2|G|538
3JAM|1|2|G|539
3JAM|1|2|A|540
3JAM|1|2|A|541
3JAM|1|2|C|542
3JAM|1|2|A|543
3JAM|1|2|A|544
3JAM|1|2|C|545
*
3JAM|1|2|G|591
3JAM|1|2|U|592
3JAM|1|2|A|593
3JAM|1|2|G|594

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4

Chain X

uS12

Chain e

eS30