J5_3JAM_004

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AUAGUUCCUUUACUACAU*AUGCUUAAAA*UG*CGAAU*AUGGU

Length

40 nucleotides

Bulged bases

3JAM|1|2|U|128, 3JAM|1|2|U|132, 3JAM|1|2|U|133, 3JAM|1|2|U|134, 3JAM|1|2|A|135, 3JAM|1|2|C|136, 3JAM|1|2|C|139, 3JAM|1|2|A|140, 3JAM|1|2|U|177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAM|1|2|A|124
3JAM|1|2|U|125
3JAM|1|2|A|126
3JAM|1|2|G|127
3JAM|1|2|U|128
3JAM|1|2|U|129
3JAM|1|2|C|130
3JAM|1|2|C|131
3JAM|1|2|U|132
3JAM|1|2|U|133
3JAM|1|2|U|134
3JAM|1|2|A|135
3JAM|1|2|C|136
3JAM|1|2|U|137
3JAM|1|2|A|138
3JAM|1|2|C|139
3JAM|1|2|A|140
3JAM|1|2|U|141
*
3JAM|1|2|A|172
3JAM|1|2|U|173
3JAM|1|2|G|174
3JAM|1|2|C|175
3JAM|1|2|U|176
3JAM|1|2|U|177
3JAM|1|2|A|178
3JAM|1|2|A|179
3JAM|1|2|A|180
3JAM|1|2|A|181
*
3JAM|1|2|U|202
3JAM|1|2|G|203
*
3JAM|1|2|C|262
3JAM|1|2|G|263
3JAM|1|2|A|264
3JAM|1|2|A|265
3JAM|1|2|U|266
*
3JAM|1|2|A|287
3JAM|1|2|U|288
3JAM|1|2|G|289
3JAM|1|2|G|290
3JAM|1|2|U|291

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain G

eS6

Chain I

eS8