J5_3JAM_005

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUGGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

3JAM|1|2|U|638, 3JAM|1|2|U|694, 3JAM|1|2|C|696, 3JAM|1|2|C|697, 3JAM|1|2|U|812, 3JAM|1|2|G|814, 3JAM|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAM|1|2|A|635
3JAM|1|2|C|636
3JAM|1|2|U|637
3JAM|1|2|U|638
3JAM|1|2|U|639
3JAM|1|2|G|640
*
3JAM|1|2|U|693
3JAM|1|2|U|694
3JAM|1|2|U|695
3JAM|1|2|C|696
3JAM|1|2|C|697
3JAM|1|2|U|698
*
3JAM|1|2|A|740
3JAM|1|2|C|741
3JAM|1|2|U|742
3JAM|1|2|U|743
3JAM|1|2|U|744
*
3JAM|1|2|A|806
3JAM|1|2|U|807
3JAM|1|2|G|808
3JAM|1|2|G|809
3JAM|1|2|A|810
3JAM|1|2|A|811
3JAM|1|2|U|812
3JAM|1|2|A|813
3JAM|1|2|G|814
3JAM|1|2|G|815
3JAM|1|2|A|816
*
3JAM|1|2|U|853
3JAM|1|2|A|854
3JAM|1|2|A|855
3JAM|1|2|U|856
3JAM|1|2|G|857
3JAM|1|2|A|858
3JAM|1|2|U|859

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS7

Chain L

uS17

Chain N

uS15

Chain W

uS8