J5_3JAP_001

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUUGU*AAAUAACGAUA*UAAUUGGAAUGAGUA*UAACGAGGAACAAC*GUAG

Length

49 nucleotides

Bulged bases

3JAP|1|2|A|505, 3JAP|1|2|A|540, 3JAP|1|2|A|541, 3JAP|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|C|31
3JAP|1|2|U|32
3JAP|1|2|U|33
3JAP|1|2|G|34
3JAP|1|2|U|35
*
3JAP|1|2|A|472
3JAP|1|2|A|473
3JAP|1|2|A|474
3JAP|1|2|U|475
3JAP|1|2|A|476
3JAP|1|2|A|477
3JAP|1|2|C|478
3JAP|1|2|G|479
3JAP|1|2|A|480
3JAP|1|2|U|481
3JAP|1|2|A|482
*
3JAP|1|2|U|503
3JAP|1|2|A|504
3JAP|1|2|A|505
3JAP|1|2|U|506
3JAP|1|2|U|507
3JAP|1|2|G|508
3JAP|1|2|G|509
3JAP|1|2|A|510
3JAP|1|2|A|511
3JAP|1|2|U|512
3JAP|1|2|G|513
3JAP|1|2|A|514
3JAP|1|2|G|515
3JAP|1|2|U|516
3JAP|1|2|A|517
*
3JAP|1|2|U|532
3JAP|1|2|A|533
3JAP|1|2|A|534
3JAP|1|2|C|535
3JAP|1|2|G|536
3JAP|1|2|A|537
3JAP|1|2|G|538
3JAP|1|2|G|539
3JAP|1|2|A|540
3JAP|1|2|A|541
3JAP|1|2|C|542
3JAP|1|2|A|543
3JAP|1|2|A|544
3JAP|1|2|C|545
*
3JAP|1|2|G|591
3JAP|1|2|U|592
3JAP|1|2|A|593
3JAP|1|2|G|594

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

uS4

Chain X

uS12

Chain Y

eS24

Chain e

eS30