J5_3JAP_002

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CAUG*CGAAUGGC*GAG*CACAU*AAGGCAG

Length

27 nucleotides

Bulged bases

3JAP|1|2|A|93, 3JAP|1|2|C|423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|C|54
3JAP|1|2|A|55
3JAP|1|2|U|56
3JAP|1|2|G|57
*
3JAP|1|2|C|90
3JAP|1|2|G|91
3JAP|1|2|A|92
3JAP|1|2|A|93
3JAP|1|2|U|94
3JAP|1|2|G|95
3JAP|1|2|G|96
3JAP|1|2|C|97
*
3JAP|1|2|G|385
3JAP|1|2|A|386
3JAP|1|2|G|387
*
3JAP|1|2|C|408
3JAP|1|2|A|409
3JAP|1|2|C|410
3JAP|1|2|A|411
3JAP|1|2|U|412
*
3JAP|1|2|A|419
3JAP|1|2|A|420
3JAP|1|2|G|421
3JAP|1|2|G|422
3JAP|1|2|C|423
3JAP|1|2|A|424
3JAP|1|2|G|425

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain G

eS6

Chain I

eS8

Chain J

uS4

Chain Y

eS24