J5_3JAP_006

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUGGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

3JAP|1|2|U|637, 3JAP|1|2|U|812, 3JAP|1|2|G|814, 3JAP|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAP|1|2|A|635
3JAP|1|2|C|636
3JAP|1|2|U|637
3JAP|1|2|U|638
3JAP|1|2|U|639
3JAP|1|2|G|640
*
3JAP|1|2|U|693
3JAP|1|2|U|694
3JAP|1|2|U|695
3JAP|1|2|C|696
3JAP|1|2|C|697
3JAP|1|2|U|698
*
3JAP|1|2|A|740
3JAP|1|2|C|741
3JAP|1|2|U|742
3JAP|1|2|U|743
3JAP|1|2|U|744
*
3JAP|1|2|A|806
3JAP|1|2|U|807
3JAP|1|2|G|808
3JAP|1|2|G|809
3JAP|1|2|A|810
3JAP|1|2|A|811
3JAP|1|2|U|812
3JAP|1|2|A|813
3JAP|1|2|G|814
3JAP|1|2|G|815
3JAP|1|2|A|816
*
3JAP|1|2|U|853
3JAP|1|2|A|854
3JAP|1|2|A|855
3JAP|1|2|U|856
3JAP|1|2|G|857
3JAP|1|2|A|858
3JAP|1|2|U|859

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS7

Chain L

uS17

Chain N

uS15

Chain W

uS8