J5_3JAQ_002

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUUGUCUCAAA*UGACAAUAAAUAACGAUA*UAAUUGGAAUGAG*CGAGGAACAAC*GUAG

Length

57 nucleotides

Bulged bases

3JAQ|1|2|A|505, 3JAQ|1|2|G|539, 3JAQ|1|2|A|540, 3JAQ|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|C|31
3JAQ|1|2|U|32
3JAQ|1|2|U|33
3JAQ|1|2|G|34
3JAQ|1|2|U|35
3JAQ|1|2|C|36
3JAQ|1|2|U|37
3JAQ|1|2|C|38
3JAQ|1|2|A|39
3JAQ|1|2|A|40
3JAQ|1|2|A|41
*
3JAQ|1|2|U|465
3JAQ|1|2|G|466
3JAQ|1|2|A|467
3JAQ|1|2|C|468
3JAQ|1|2|A|469
3JAQ|1|2|A|470
3JAQ|1|2|U|471
3JAQ|1|2|A|472
3JAQ|1|2|A|473
3JAQ|1|2|A|474
3JAQ|1|2|U|475
3JAQ|1|2|A|476
3JAQ|1|2|A|477
3JAQ|1|2|C|478
3JAQ|1|2|G|479
3JAQ|1|2|A|480
3JAQ|1|2|U|481
3JAQ|1|2|A|482
*
3JAQ|1|2|U|503
3JAQ|1|2|A|504
3JAQ|1|2|A|505
3JAQ|1|2|U|506
3JAQ|1|2|U|507
3JAQ|1|2|G|508
3JAQ|1|2|G|509
3JAQ|1|2|A|510
3JAQ|1|2|A|511
3JAQ|1|2|U|512
3JAQ|1|2|G|513
3JAQ|1|2|A|514
3JAQ|1|2|G|515
*
3JAQ|1|2|C|535
3JAQ|1|2|G|536
3JAQ|1|2|A|537
3JAQ|1|2|G|538
3JAQ|1|2|G|539
3JAQ|1|2|A|540
3JAQ|1|2|A|541
3JAQ|1|2|C|542
3JAQ|1|2|A|543
3JAQ|1|2|A|544
3JAQ|1|2|C|545
*
3JAQ|1|2|G|591
3JAQ|1|2|U|592
3JAQ|1|2|A|593
3JAQ|1|2|G|594

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain J

uS4

Chain X

uS12

Chain Y

eS24

Chain e

eS30