J5_3JAQ_006

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUGGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

3JAQ|1|2|C|696, 3JAQ|1|2|C|697, 3JAQ|1|2|U|812, 3JAQ|1|2|G|814, 3JAQ|1|2|A|855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAQ|1|2|A|635
3JAQ|1|2|C|636
3JAQ|1|2|U|637
3JAQ|1|2|U|638
3JAQ|1|2|U|639
3JAQ|1|2|G|640
*
3JAQ|1|2|U|693
3JAQ|1|2|U|694
3JAQ|1|2|U|695
3JAQ|1|2|C|696
3JAQ|1|2|C|697
3JAQ|1|2|U|698
*
3JAQ|1|2|A|740
3JAQ|1|2|C|741
3JAQ|1|2|U|742
3JAQ|1|2|U|743
3JAQ|1|2|U|744
*
3JAQ|1|2|A|806
3JAQ|1|2|U|807
3JAQ|1|2|G|808
3JAQ|1|2|G|809
3JAQ|1|2|A|810
3JAQ|1|2|A|811
3JAQ|1|2|U|812
3JAQ|1|2|A|813
3JAQ|1|2|G|814
3JAQ|1|2|G|815
3JAQ|1|2|A|816
*
3JAQ|1|2|U|853
3JAQ|1|2|A|854
3JAQ|1|2|A|855
3JAQ|1|2|U|856
3JAQ|1|2|G|857
3JAQ|1|2|A|858
3JAQ|1|2|U|859

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS7

Chain L

uS17

Chain N

uS15

Chain W

uS8