J5_3JCD_009

3D structure

PDB id

3JCD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

3JCD|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_3JCD_009 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1332

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3JCD|1|A|C|47
3JCD|1|A|G|48
3JCD|1|A|A|49
3JCD|1|A|U|50
3JCD|1|A|G|51
3JCD|1|A|A|52
3JCD|1|A|A|53
3JCD|1|A|G|54
*
3JCD|1|A|C|116
3JCD|1|A|G|117
3JCD|1|A|A|118
3JCD|1|A|A|119
3JCD|1|A|U|120
3JCD|1|A|G|121
*
3JCD|1|A|C|130
3JCD|1|A|A|131
*
3JCD|1|A|U|148
3JCD|1|A|A|149
3JCD|1|A|U|150
*
3JCD|1|A|A|176
3JCD|1|A|G|177
3JCD|1|A|G|178

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34