J5_3JCT_001
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 3JCT|1|2|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3JCT_001 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0601
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCT|1|1|A|20
3JCT|1|1|G|21
3JCT|1|1|G|22
*
3JCT|1|2|C|35
3JCT|1|2|G|36
3JCT|1|2|A|37
3JCT|1|2|U|38
3JCT|1|2|G|39
3JCT|1|2|A|40
3JCT|1|2|A|41
3JCT|1|2|G|42
*
3JCT|1|2|U|102
3JCT|1|2|G|103
3JCT|1|2|A|104
3JCT|1|2|A|105
3JCT|1|2|C|106
3JCT|1|2|G|107
*
3JCT|1|2|C|115
3JCT|1|2|G|116
*
3JCT|1|2|C|137
3JCT|1|2|A|138
3JCT|1|2|U|139
Current chains
- Chain 1
- RDN25-1 rRNA
- Chain 2
- RDN58-1 rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
- Chain n
- Pescadillo homolog
- Chain q
- Ribosome biogenesis protein NOP53
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