J5_3JCT_005
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUUUCUGCCCAGUGCU*GGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCA*UGGAUUAAC
- Length
- 78 nucleotides
- Bulged bases
- 3JCT|1|1|U|2193, 3JCT|1|1|A|2243, 3JCT|1|1|A|2244, 3JCT|1|1|A|2256, 3JCT|1|1|U|2269, 3JCT|1|1|U|2274, 3JCT|1|1|A|2275, 3JCT|1|1|G|2316, 3JCT|1|1|U|2318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCT|1|1|G|2130
3JCT|1|1|A|2131
3JCT|1|1|C|2132
3JCT|1|1|U|2133
3JCT|1|1|G|2134
*
3JCT|1|1|C|2146
3JCT|1|1|A|2147
3JCT|1|1|U|2148
3JCT|1|1|A|2149
3JCT|1|1|G|2150
*
3JCT|1|1|U|2186
3JCT|1|1|G|2187
3JCT|1|1|A|2188
3JCT|1|1|U|2189
3JCT|1|1|U|2190
3JCT|1|1|U|2191
3JCT|1|1|C|2192
3JCT|1|1|U|2193
3JCT|1|1|G|2194
3JCT|1|1|C|2195
3JCT|1|1|C|2196
3JCT|1|1|C|2197
3JCT|1|1|A|2198
3JCT|1|1|G|2199
3JCT|1|1|U|2200
3JCT|1|1|G|2201
3JCT|1|1|C|2202
3JCT|1|1|U|2203
*
3JCT|1|1|G|2239
3JCT|1|1|G|2240
3JCT|1|1|U|2241
3JCT|1|1|A|2242
3JCT|1|1|A|2243
3JCT|1|1|A|2244
3JCT|1|1|C|2245
3JCT|1|1|G|2246
3JCT|1|1|G|2247
3JCT|1|1|C|2248
3JCT|1|1|G|2249
3JCT|1|1|G|2250
3JCT|1|1|G|2251
3JCT|1|1|A|2252
3JCT|1|1|G|2253
3JCT|1|1|U|2254
3JCT|1|1|A|2255
3JCT|1|1|A|2256
3JCT|1|1|C|2257
3JCT|1|1|U|2258
3JCT|1|1|A|2259
3JCT|1|1|U|2260
3JCT|1|1|G|2261
3JCT|1|1|A|2262
3JCT|1|1|C|2263
3JCT|1|1|U|2264
3JCT|1|1|C|2265
3JCT|1|1|U|2266
3JCT|1|1|C|2267
3JCT|1|1|U|2268
3JCT|1|1|U|2269
3JCT|1|1|A|2270
3JCT|1|1|A|2271
3JCT|1|1|G|2272
3JCT|1|1|G|2273
3JCT|1|1|U|2274
3JCT|1|1|A|2275
3JCT|1|1|G|2276
3JCT|1|1|C|2277
3JCT|1|1|C|2278
3JCT|1|1|A|2279
*
3JCT|1|1|U|2314
3JCT|1|1|G|2315
3JCT|1|1|G|2316
3JCT|1|1|A|2317
3JCT|1|1|U|2318
3JCT|1|1|U|2319
3JCT|1|1|A|2320
3JCT|1|1|A|2321
3JCT|1|1|C|2322
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain m
- Nucleolar GTP-binding protein 2
- Chain p
- 60S ribosomal protein L43-A
- Chain v
- Ribosome biogenesis protein RPF2
- Chain x
- Ribosome assembly protein 4
Coloring options: