J5_3JCT_006
3D structure
- PDB id
- 3JCT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-em structure of eukaryotic pre-60S ribosomal subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GGAAAGAAGACCC*GGGAUAACUGGCUUGUGGC*GCUUUUUGAUUCUUCGAUGUC*GGGUUUAG*UAGUUUUACCC
- Length
- 72 nucleotides
- Bulged bases
- 3JCT|1|1|A|2397, 3JCT|1|1|A|2819, 3JCT|1|1|A|2820, 3JCT|1|1|G|2824, 3JCT|1|1|G|2828, 3JCT|1|1|U|2829, 3JCT|1|1|U|2859, 3JCT|1|1|U|2860, 3JCT|1|1|U|2861, 3JCT|1|1|U|2862, 3JCT|1|1|G|2863, 3JCT|1|1|C|2867, 3JCT|1|1|U|2869, 3JCT|1|1|G|2871, 3JCT|1|1|A|2872, 3JCT|1|1|U|2978, 3JCT|1|1|C|2983
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3JCT|1|1|G|2395
3JCT|1|1|G|2396
3JCT|1|1|A|2397
3JCT|1|1|A|2398
3JCT|1|1|A|2399
3JCT|1|1|G|2400
3JCT|1|1|A|2401
3JCT|1|1|A|2402
3JCT|1|1|G|2403
3JCT|1|1|A|2404
3JCT|1|1|C|2405
3JCT|1|1|C|2406
3JCT|1|1|C|2407
*
3JCT|1|1|G|2814
3JCT|1|1|G|2815
3JCT|1|1|G|2816
3JCT|1|1|A|2817
3JCT|1|1|U|2818
3JCT|1|1|A|2819
3JCT|1|1|A|2820
3JCT|1|1|C|2821
3JCT|1|1|U|2822
3JCT|1|1|G|2823
3JCT|1|1|G|2824
3JCT|1|1|C|2825
3JCT|1|1|U|2826
3JCT|1|1|U|2827
3JCT|1|1|G|2828
3JCT|1|1|U|2829
3JCT|1|1|G|2830
3JCT|1|1|G|2831
3JCT|1|1|C|2832
*
3JCT|1|1|G|2856
3JCT|1|1|C|2857
3JCT|1|1|U|2858
3JCT|1|1|U|2859
3JCT|1|1|U|2860
3JCT|1|1|U|2861
3JCT|1|1|U|2862
3JCT|1|1|G|2863
3JCT|1|1|A|2864
3JCT|1|1|U|2865
3JCT|1|1|U|2866
3JCT|1|1|C|2867
3JCT|1|1|U|2868
3JCT|1|1|U|2869
3JCT|1|1|C|2870
3JCT|1|1|G|2871
3JCT|1|1|A|2872
3JCT|1|1|U|2873
3JCT|1|1|G|2874
3JCT|1|1|U|2875
3JCT|1|1|C|2876
*
3JCT|1|1|G|2950
3JCT|1|1|G|2951
3JCT|1|1|G|2952
3JCT|1|1|U|2953
3JCT|1|1|U|2954
3JCT|1|1|U|2955
3JCT|1|1|A|2956
3JCT|1|1|G|2957
*
3JCT|1|1|U|2975
3JCT|1|1|A|2976
3JCT|1|1|G|2977
3JCT|1|1|U|2978
3JCT|1|1|U|2979
3JCT|1|1|U|2980
3JCT|1|1|U|2981
3JCT|1|1|A|2982
3JCT|1|1|C|2983
3JCT|1|1|C|2984
3JCT|1|1|C|2985
Current chains
- Chain 1
- RDN25-1 rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain B
- 60S ribosomal protein L3
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
- Chain s
- Nuclear GTP-binding protein NUG1
- Chain x
- Ribosome assembly protein 4
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