J5_3JYV_002

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUUGUCUCAAAGUUAAG*CGCGCAAAU*AGUGACAAUAAAUAAC*GGAAUGAGUACAAUGUAAAUACCUUAACGAGGAACAAU*AUAG

Length

84 nucleotides

Bulged bases

3JYV|1|A|U|44, 3JYV|1|A|A|47, 3JYV|1|A|A|475, 3JYV|1|A|U|476, 3JYV|1|A|C|543, 3JYV|1|A|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|C|31
3JYV|1|A|U|32
3JYV|1|A|U|33
3JYV|1|A|G|34
3JYV|1|A|U|35
3JYV|1|A|C|36
3JYV|1|A|U|37
3JYV|1|A|C|38
3JYV|1|A|A|39
3JYV|1|A|A|40
3JYV|1|A|A|41
3JYV|1|A|G|42
3JYV|1|A|U|44
3JYV|1|A|U|45
3JYV|1|A|A|46
3JYV|1|A|A|47
3JYV|1|A|G|48
*
3JYV|1|A|C|431
3JYV|1|A|G|432
3JYV|1|A|C|433
3JYV|1|A|G|434
3JYV|1|A|C|435
3JYV|1|A|A|436
3JYV|1|A|A|437
3JYV|1|A|A|438
3JYV|1|A|U|439
*
3JYV|1|A|A|464
3JYV|1|A|G|465
3JYV|1|A|U|466
3JYV|1|A|G|467
3JYV|1|A|A|468
3JYV|1|A|C|469
3JYV|1|A|A|470
3JYV|1|A|A|471
3JYV|1|A|U|472
3JYV|1|A|A|473
3JYV|1|A|A|474
3JYV|1|A|A|475
3JYV|1|A|U|476
3JYV|1|A|A|477
3JYV|1|A|A|478
3JYV|1|A|C|479
*
3JYV|1|A|G|509
3JYV|1|A|G|510
3JYV|1|A|A|511
3JYV|1|A|A|512
3JYV|1|A|U|513
3JYV|1|A|G|514
3JYV|1|A|A|515
3JYV|1|A|G|516
3JYV|1|A|U|517
3JYV|1|A|A|518
3JYV|1|A|C|519
3JYV|1|A|A|520
3JYV|1|A|A|521
3JYV|1|A|U|522
3JYV|1|A|G|523
3JYV|1|A|U|524
3JYV|1|A|A|525
3JYV|1|A|A|526
3JYV|1|A|A|527
3JYV|1|A|U|528
3JYV|1|A|A|529
3JYV|1|A|C|530
3JYV|1|A|C|531
3JYV|1|A|U|532
3JYV|1|A|U|533
3JYV|1|A|A|534
3JYV|1|A|A|535
3JYV|1|A|C|536
3JYV|1|A|G|537
3JYV|1|A|A|538
3JYV|1|A|G|539
3JYV|1|A|G|540
3JYV|1|A|A|541
3JYV|1|A|A|542
3JYV|1|A|C|543
3JYV|1|A|A|544
3JYV|1|A|A|545
3JYV|1|A|U|546
*
3JYV|1|A|A|592
3JYV|1|A|U|593
3JYV|1|A|A|594
3JYV|1|A|G|595

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9(A)

Chain L

40S ribosomal protein S23(A)