J5_3JYV_003

3D structure

PDB id

3JYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAUGUCUAAGUAUAAGCAAUUU*GAAACUGCGAAUGGC*GAG*CAC*GGCAG

Length

48 nucleotides

Bulged bases

3JYV|1|A|U|56, 3JYV|1|A|A|61, 3JYV|1|A|A|65, 3JYV|1|A|U|66, 3JYV|1|A|A|93, 3JYV|1|A|C|424, 3JYV|1|A|A|425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JYV|1|A|C|54
3JYV|1|A|A|55
3JYV|1|A|U|56
3JYV|1|A|G|57
3JYV|1|A|U|58
3JYV|1|A|C|59
3JYV|1|A|U|60
3JYV|1|A|A|61
3JYV|1|A|A|62
3JYV|1|A|G|63
3JYV|1|A|U|64
3JYV|1|A|A|65
3JYV|1|A|U|66
3JYV|1|A|A|67
3JYV|1|A|A|68
3JYV|1|A|G|69
3JYV|1|A|C|70
3JYV|1|A|A|71
3JYV|1|A|A|72
3JYV|1|A|U|73
3JYV|1|A|U|74
3JYV|1|A|U|75
*
3JYV|1|A|G|83
3JYV|1|A|A|84
3JYV|1|A|A|85
3JYV|1|A|A|86
3JYV|1|A|C|87
3JYV|1|A|U|88
3JYV|1|A|G|89
3JYV|1|A|C|90
3JYV|1|A|G|91
3JYV|1|A|A|92
3JYV|1|A|A|93
3JYV|1|A|U|94
3JYV|1|A|G|95
3JYV|1|A|G|96
3JYV|1|A|C|97
*
3JYV|1|A|G|386
3JYV|1|A|A|387
3JYV|1|A|G|388
*
3JYV|1|A|C|409
3JYV|1|A|A|410
3JYV|1|A|C|411
*
3JYV|1|A|G|422
3JYV|1|A|G|423
3JYV|1|A|C|424
3JYV|1|A|A|425
3JYV|1|A|G|426

Current chains

Chain A

18S rRNA

Nearby chains