Loop J5_3JYV

3D structure

PDB id: 3JYV (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the 40S rRNA and proteins and P/E tRNA for eukaryotic ribosome based on cryo-EM map of Thermomyces lanuginosus ribosome at 8.9A resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.9 Å

Loop

Sequence: AUAGACAU*AUGCUUAAAA*UGUAUUU*AACUUUUCGAAUCGCAU*GGCGAUGGUU
Length: 52 nucleotides
Bulged bases: 3JYV|1|A|U|208, 3JYV|1|A|C|263, 3JYV|1|A|G|264, 3JYV|1|A|A|265, 3JYV|1|A|U|267
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

3JYV|1|A|A|124
3JYV|1|A|U|125
3JYV|1|A|A|126
3JYV|1|A|G|127
3JYV|1|A|A|138
3JYV|1|A|C|139
3JYV|1|A|A|140
3JYV|1|A|U|141
*
3JYV|1|A|A|173
3JYV|1|A|U|174
3JYV|1|A|G|175
3JYV|1|A|C|176
3JYV|1|A|U|177
3JYV|1|A|U|178
3JYV|1|A|A|179
3JYV|1|A|A|180
3JYV|1|A|A|181
3JYV|1|A|A|182
*
3JYV|1|A|U|203
3JYV|1|A|G|204
3JYV|1|A|U|205
3JYV|1|A|A|206
3JYV|1|A|U|207
3JYV|1|A|U|208
3JYV|1|A|U|209
*
3JYV|1|A|A|256
3JYV|1|A|A|257
3JYV|1|A|C|258
3JYV|1|A|U|259
3JYV|1|A|U|260
3JYV|1|A|U|261
3JYV|1|A|U|262
3JYV|1|A|C|263
3JYV|1|A|G|264
3JYV|1|A|A|265
3JYV|1|A|A|266
3JYV|1|A|U|267
3JYV|1|A|C|268
3JYV|1|A|G|269
3JYV|1|A|C|270
3JYV|1|A|A|271
3JYV|1|A|U|272
*
3JYV|1|A|G|284
3JYV|1|A|G|285
3JYV|1|A|C|286
3JYV|1|A|G|287
3JYV|1|A|A|288
3JYV|1|A|U|289
3JYV|1|A|G|290
3JYV|1|A|G|291
3JYV|1|A|U|292
3JYV|1|A|U|293

Current chains

Chain A: 18S rRNA

Nearby chains

No other chains within 10Å

J5_3JYV_004