J5_3PIP_004

3D structure

PDB id

3PIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

ACGAAAAGACCC*GGGAUAACA*UCGAUGUCG*UGGGUUCAG*CGGUCUCUAU

Length

49 nucleotides

Bulged bases

3PIP|1|X|C|2038, 3PIP|1|X|A|2045, 3PIP|1|X|A|2427, 3PIP|1|X|U|2564, 3PIP|1|X|U|2588, 3PIP|1|X|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3PIP|1|X|A|2037
3PIP|1|X|C|2038
3PIP|1|X|G|2039
3PIP|1|X|A|2040
3PIP|1|X|A|2041
3PIP|1|X|A|2042
3PIP|1|X|A|2043
3PIP|1|X|G|2044
3PIP|1|X|A|2045
3PIP|1|X|C|2046
3PIP|1|X|C|2047
3PIP|1|X|C|2048
*
3PIP|1|X|G|2424
3PIP|1|X|G|2425
3PIP|1|X|G|2426
3PIP|1|X|A|2427
3PIP|1|X|U|2428
3PIP|1|X|A|2429
3PIP|1|X|A|2430
3PIP|1|X|C|2431
3PIP|1|X|A|2432
*
3PIP|1|X|U|2479
3PIP|1|X|C|2480
3PIP|1|X|G|2481
3PIP|1|X|A|2482
3PIP|1|X|U|2483
3PIP|1|X|G|2484
3PIP|1|X|U|2485
3PIP|1|X|C|2486
3PIP|1|X|G|2487
*
3PIP|1|X|U|2559
3PIP|1|X|G|2560
3PIP|1|X|G|2561
3PIP|1|X|G|2562
3PIP|1|X|U|2563
3PIP|1|X|U|2564
3PIP|1|X|C|2565
3PIP|1|X|A|2566
3PIP|1|X|G|2567
*
3PIP|1|X|C|2585
3PIP|1|X|G|2586
3PIP|1|X|G|2587
3PIP|1|X|U|2588
3PIP|1|X|C|2589
3PIP|1|X|U|2590
3PIP|1|X|C|2591
3PIP|1|X|U|2592
3PIP|1|X|A|2593
3PIP|1|X|U|2594

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32