J5_3ZGZ_002
3D structure
- PDB id
- 3ZGZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- AUGG*CAA*UCG*UGUG*CU
- Length
- 16 nucleotides
- Bulged bases
- 3ZGZ|1|E|U|8, 3ZGZ|1|E|G|9, 3ZGZ|1|E|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_3ZGZ_002 not in the Motif Atlas
- Homologous match to J5_3ZGZ_001
- Geometric discrepancy: 0.0575
- The information below is about J5_3ZGZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_20390.1
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3ZGZ|1|E|A|7
3ZGZ|1|E|U|8
3ZGZ|1|E|G|9
3ZGZ|1|E|G|10
*
3ZGZ|1|E|C|25
3ZGZ|1|E|A|26
3ZGZ|1|E|A|27
*
3ZGZ|1|E|U|43
3ZGZ|1|E|C|44
3ZGZ|1|E|G|45
*
3ZGZ|1|E|U|47|||I
3ZGZ|1|E|G|47|||J
3ZGZ|1|E|U|48
3ZGZ|1|E|G|49
*
3ZGZ|1|E|C|65
3ZGZ|1|E|U|66
Current chains
- Chain E
- TRNA-LEU UAA ISOACCEPTOR
Nearby chains
- Chain D
- LEUCINE--TRNA LIGASE
Coloring options: