J5_4AQY_001
3D structure
- PDB id
- 4AQY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome-apramycin complexes
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4AQY_001 not in the Motif Atlas
- Homologous match to J5_6CZR_007
- Geometric discrepancy: 0.1185
- The information below is about J5_6CZR_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4AQY|1|A|C|36
4AQY|1|A|U|37
4AQY|1|A|G|38
4AQY|1|A|G|39
*
4AQY|1|A|C|403
4AQY|1|A|U|404
4AQY|1|A|U|405
4AQY|1|A|G|406
*
4AQY|1|A|C|436
4AQY|1|A|U|437
4AQY|1|A|G|438
4AQY|1|A|A|439
4AQY|1|A|A|441
4AQY|1|A|C|442
4AQY|1|A|C|443
*
4AQY|1|A|G|491
4AQY|1|A|G|492
4AQY|1|A|G|493
4AQY|1|A|U|494
4AQY|1|A|A|495
4AQY|1|A|A|496
4AQY|1|A|U|498
4AQY|1|A|A|499
4AQY|1|A|G|500
*
4AQY|1|A|C|545
4AQY|1|A|G|546
4AQY|1|A|A|547
4AQY|1|A|G|548
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain D
- 30S RIBOSOMAL PROTEIN S4
- Chain L
- 30S RIBOSOMAL PROTEIN S12
Coloring options: