J5_4AQY_002

3D structure

PDB id

4AQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome-apramycin complexes

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAAG*CGGACGGG*CAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

4AQY|1|A|A|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4AQY|1|A|G|57
4AQY|1|A|C|58
4AQY|1|A|A|59
4AQY|1|A|A|60
4AQY|1|A|G|61
*
4AQY|1|A|C|106
4AQY|1|A|G|107
4AQY|1|A|G|108
4AQY|1|A|A|109
4AQY|1|A|C|110
4AQY|1|A|G|111
4AQY|1|A|G|112
4AQY|1|A|G|113
*
4AQY|1|A|C|314
4AQY|1|A|A|315
4AQY|1|A|G|316
*
4AQY|1|A|C|337
4AQY|1|A|A|338
4AQY|1|A|C|339
*
4AQY|1|A|G|350
4AQY|1|A|G|351
4AQY|1|A|C|352
4AQY|1|A|A|353
4AQY|1|A|G|354
4AQY|1|A|C|355

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain P

30S RIBOSOMAL PROTEIN S16

Chain T

30S RIBOSOMAL PROTEIN S20