J5_4BTS_009
3D structure
- PDB id
- 4BTS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAA*UAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4BTS|1|BA|A|89, 4BTS|1|BA|C|416
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4BTS_009 not in the Motif Atlas
- Homologous match to J5_8P9A_017
- Geometric discrepancy: 0.1076
- The information below is about J5_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4BTS|1|BA|C|53
4BTS|1|BA|A|54
4BTS|1|BA|U|55
4BTS|1|BA|G|56
*
4BTS|1|BA|C|86
4BTS|1|BA|G|87
4BTS|1|BA|A|88
4BTS|1|BA|A|89
4BTS|1|BA|U|90
4BTS|1|BA|G|91
4BTS|1|BA|G|92
4BTS|1|BA|C|93
*
4BTS|1|BA|G|377
4BTS|1|BA|A|378
4BTS|1|BA|A|379
*
4BTS|1|BA|U|400
4BTS|1|BA|A|401
4BTS|1|BA|C|402
*
4BTS|1|BA|G|414
4BTS|1|BA|G|415
4BTS|1|BA|C|416
4BTS|1|BA|A|417
4BTS|1|BA|G|418
Current chains
- Chain BA
- 18S ribosomal RNA
Nearby chains
- Chain B2
- 40S RIBOSOMAL PROTEIN S8
- Chain BD
- 40S RIBOSOMAL PROTEIN RPS9E
- Chain BP
- 40S RIBOSOMAL PROTEIN S24
- Chain BW
- 40S RIBOSOMAL PROTEIN RPS4E
- Chain BY
- 40S RIBOSOMAL PROTEIN S6
Coloring options: