J5_4BTS_017

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAAUUAAAGAUUACAU*AUGCUUAAAAU*ACG*CGGAU*AUAAA

Length

40 nucleotides

Bulged bases

4BTS|1|CA|U|124, 4BTS|1|CA|C|134, 4BTS|1|CA|A|135, 4BTS|1|CA|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4BTS|1|CA|U|121
4BTS|1|CA|A|122
4BTS|1|CA|A|123
4BTS|1|CA|U|124
4BTS|1|CA|U|125
4BTS|1|CA|A|126
4BTS|1|CA|A|127
4BTS|1|CA|A|128
4BTS|1|CA|G|129
4BTS|1|CA|A|130
4BTS|1|CA|U|131
4BTS|1|CA|U|132
4BTS|1|CA|A|133
4BTS|1|CA|C|134
4BTS|1|CA|A|135
4BTS|1|CA|U|136
*
4BTS|1|CA|A|167
4BTS|1|CA|U|168
4BTS|1|CA|G|169
4BTS|1|CA|C|170
4BTS|1|CA|U|171
4BTS|1|CA|U|172
4BTS|1|CA|A|173
4BTS|1|CA|A|174
4BTS|1|CA|A|175
4BTS|1|CA|A|176
4BTS|1|CA|U|177
*
4BTS|1|CA|A|197
4BTS|1|CA|C|198
4BTS|1|CA|G|199
*
4BTS|1|CA|C|260
4BTS|1|CA|G|261
4BTS|1|CA|G|262
4BTS|1|CA|A|263
4BTS|1|CA|U|264
*
4BTS|1|CA|A|279
4BTS|1|CA|U|280
4BTS|1|CA|A|281
4BTS|1|CA|A|282
4BTS|1|CA|A|283

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain C2

40S RIBOSOMAL PROTEIN S8

Chain CW

40S RIBOSOMAL PROTEIN RPS4E

Chain CY

40S RIBOSOMAL PROTEIN S6