J5_4D61_003
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUCGCUCGCUCCUCUCCCACUUGG*CAUGCCGACGGGC*GUGCAUUU*AACCUCGGGCCGAUCG*CGACGACC
- Length
- 69 nucleotides
- Bulged bases
- 4D61|1|1|U|124, 4D61|1|1|C|125, 4D61|1|1|G|126, 4D61|1|1|C|127, 4D61|1|1|C|133, 4D61|1|1|C|134, 4D61|1|1|U|135, 4D61|1|1|C|136, 4D61|1|1|U|137, 4D61|1|1|C|138, 4D61|1|1|C|139, 4D61|1|1|C|140, 4D61|1|1|U|143, 4D61|1|1|U|144, 4D61|1|1|C|182, 4D61|1|1|C|304, 4D61|1|1|U|305, 4D61|1|1|C|306, 4D61|1|1|G|307, 4D61|1|1|C|311, 4D61|1|1|C|337
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D61|1|1|G|123
4D61|1|1|U|124
4D61|1|1|C|125
4D61|1|1|G|126
4D61|1|1|C|127
4D61|1|1|U|128
4D61|1|1|C|129
4D61|1|1|G|130
4D61|1|1|C|131
4D61|1|1|U|132
4D61|1|1|C|133
4D61|1|1|C|134
4D61|1|1|U|135
4D61|1|1|C|136
4D61|1|1|U|137
4D61|1|1|C|138
4D61|1|1|C|139
4D61|1|1|C|140
4D61|1|1|A|141
4D61|1|1|C|142
4D61|1|1|U|143
4D61|1|1|U|144
4D61|1|1|G|145
4D61|1|1|G|146
*
4D61|1|1|C|174
4D61|1|1|A|175
4D61|1|1|U|176
4D61|1|1|G|177
4D61|1|1|C|178
4D61|1|1|C|179
4D61|1|1|G|180
4D61|1|1|A|181
4D61|1|1|C|182
4D61|1|1|G|183
4D61|1|1|G|184
4D61|1|1|G|185
4D61|1|1|C|186
*
4D61|1|1|G|213
4D61|1|1|U|214
4D61|1|1|G|215
4D61|1|1|C|216
4D61|1|1|A|217
4D61|1|1|U|218
4D61|1|1|U|219
4D61|1|1|U|220
*
4D61|1|1|A|301
4D61|1|1|A|302
4D61|1|1|C|303
4D61|1|1|C|304
4D61|1|1|U|305
4D61|1|1|C|306
4D61|1|1|G|307
4D61|1|1|G|308
4D61|1|1|G|309
4D61|1|1|C|310
4D61|1|1|C|311
4D61|1|1|G|312
4D61|1|1|A|313
4D61|1|1|U|314
4D61|1|1|C|315
4D61|1|1|G|316
*
4D61|1|1|C|334
4D61|1|1|G|335
4D61|1|1|A|336
4D61|1|1|C|337
4D61|1|1|G|338
4D61|1|1|A|339
4D61|1|1|C|340
4D61|1|1|C|341
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1
- Chain G
- 40S RIBOSOMAL PROTEIN S6
- Chain I
- 40S RIBOSOMAL PROTEIN S8
Coloring options: