J5_4DR7_001

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAGC*GCGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DR7|1|A|C|36
4DR7|1|A|U|37
4DR7|1|A|G|38
4DR7|1|A|G|39
*
4DR7|1|A|C|403
4DR7|1|A|U|404
4DR7|1|A|U|405
4DR7|1|A|G|406
*
4DR7|1|A|C|436
4DR7|1|A|U|437
4DR7|1|A|G|438
4DR7|1|A|A|439
4DR7|1|A|A|440
4DR7|1|A|C|442
*
4DR7|1|A|G|492
4DR7|1|A|G|494
4DR7|1|A|U|495
4DR7|1|A|A|496
4DR7|1|A|A|497
4DR7|1|A|U|498
4DR7|1|A|A|499
4DR7|1|A|G|500
4DR7|1|A|C|501
*
4DR7|1|A|G|544
4DR7|1|A|C|545
4DR7|1|A|G|546
4DR7|1|A|A|547
4DR7|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12