J5_4DS6_001

3D structure

PDB id

4DS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a group II intron in the pre-catalytic state

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

4DS6|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4DS6|1|A|U|24
4DS6|1|A|A|25
4DS6|1|A|U|26
4DS6|1|A|A|27
4DS6|1|A|G|28
*
4DS6|1|A|C|40
4DS6|1|A|G|41
4DS6|1|A|A|42
4DS6|1|A|A|43
*
4DS6|1|A|U|65
4DS6|1|A|U|66
4DS6|1|A|A|67
4DS6|1|A|G|68
*
4DS6|1|A|C|119
4DS6|1|A|A|120
4DS6|1|A|A|121
4DS6|1|A|A|122
4DS6|1|A|C|123
*
4DS6|1|A|G|243
4DS6|1|A|G|244
4DS6|1|A|A|245
4DS6|1|A|A|246
4DS6|1|A|A|247

Current chains

Chain A

Mutant Group IIC Intron

Nearby chains