J5_4E8P_001

3D structure

PDB id

4E8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.28 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

4E8P|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4E8P|1|A|U|24
4E8P|1|A|A|25
4E8P|1|A|U|26
4E8P|1|A|A|27
4E8P|1|A|G|28
*
4E8P|1|A|C|40
4E8P|1|A|G|41
4E8P|1|A|A|42
4E8P|1|A|A|43
*
4E8P|1|A|U|65
4E8P|1|A|U|66
4E8P|1|A|A|67
4E8P|1|A|G|68
*
4E8P|1|A|C|119
4E8P|1|A|A|120
4E8P|1|A|A|121
4E8P|1|A|A|122
4E8P|1|A|C|123
*
4E8P|1|A|G|243
4E8P|1|A|G|244
4E8P|1|A|A|245
4E8P|1|A|A|246
4E8P|1|A|A|247

Current chains

Chain A

Group IIC intron

Nearby chains