J5_4FAX_001

3D structure

PDB id

4FAX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAUAG*CGAA*UUAG*CAAAC*GGAAA

Length

23 nucleotides

Bulged bases

4FAX|1|A|A|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4FAX|1|A|U|24
4FAX|1|A|A|25
4FAX|1|A|U|26
4FAX|1|A|A|27
4FAX|1|A|G|28
*
4FAX|1|A|C|40
4FAX|1|A|G|41
4FAX|1|A|A|42
4FAX|1|A|A|43
*
4FAX|1|A|U|65
4FAX|1|A|U|66
4FAX|1|A|A|67
4FAX|1|A|G|68
*
4FAX|1|A|C|119
4FAX|1|A|A|120
4FAX|1|A|A|121
4FAX|1|A|A|122
4FAX|1|A|C|123
*
4FAX|1|A|G|243
4FAX|1|A|G|244
4FAX|1|A|A|245
4FAX|1|A|A|246
4FAX|1|A|A|247

Current chains

Chain A

Group IIC intron

Nearby chains