J5_4IO9_004
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAAUCUCA*UC*GC*GUGAAUAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4IO9|1|X|G|1749, 4IO9|1|X|G|1754
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4IO9_004 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.1795
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
4IO9|1|X|G|1691
4IO9|1|X|C|1692
4IO9|1|X|A|1693
4IO9|1|X|A|1694
4IO9|1|X|U|1695
4IO9|1|X|C|1696
4IO9|1|X|U|1697
4IO9|1|X|C|1698
4IO9|1|X|A|1699
*
4IO9|1|X|U|1723
4IO9|1|X|C|1724
*
4IO9|1|X|G|1742
4IO9|1|X|C|1743
*
4IO9|1|X|G|1747
4IO9|1|X|U|1748
4IO9|1|X|G|1749
4IO9|1|X|A|1750
4IO9|1|X|A|1751
4IO9|1|X|U|1752
4IO9|1|X|A|1753
4IO9|1|X|G|1754
4IO9|1|X|G|1755
*
4IO9|1|X|C|1971
4IO9|1|X|G|1972
4IO9|1|X|C|1973
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain H
- 50S ribosomal protein L14
- Chain M
- 50S ribosomal protein L19
Coloring options: