J5_4IO9_005

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

4IO9|1|X|A|2045, 4IO9|1|X|A|2427, 4IO9|1|X|U|2428, 4IO9|1|X|U|2564, 4IO9|1|X|U|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4IO9|1|X|A|2040
4IO9|1|X|A|2041
4IO9|1|X|A|2042
4IO9|1|X|A|2043
4IO9|1|X|G|2044
4IO9|1|X|A|2045
4IO9|1|X|C|2046
4IO9|1|X|C|2047
*
4IO9|1|X|G|2425
4IO9|1|X|G|2426
4IO9|1|X|A|2427
4IO9|1|X|U|2428
4IO9|1|X|A|2429
4IO9|1|X|A|2430
4IO9|1|X|C|2431
4IO9|1|X|A|2432
*
4IO9|1|X|U|2479
4IO9|1|X|C|2480
4IO9|1|X|G|2481
4IO9|1|X|A|2482
4IO9|1|X|U|2483
4IO9|1|X|G|2484
4IO9|1|X|U|2485
4IO9|1|X|C|2486
*
4IO9|1|X|G|2561
4IO9|1|X|G|2562
4IO9|1|X|U|2563
4IO9|1|X|U|2564
4IO9|1|X|C|2565
4IO9|1|X|A|2566
4IO9|1|X|G|2567
*
4IO9|1|X|C|2585
4IO9|1|X|G|2586
4IO9|1|X|G|2587
4IO9|1|X|U|2588
4IO9|1|X|C|2589
4IO9|1|X|U|2590

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32