J5_4JI5_002

3D structure

PDB id

4JI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

GCAAG*CGGACGGG*CAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

4JI5|1|A|A|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4JI5|1|A|G|57
4JI5|1|A|C|58
4JI5|1|A|A|59
4JI5|1|A|A|60
4JI5|1|A|G|61
*
4JI5|1|A|C|106
4JI5|1|A|G|107
4JI5|1|A|G|108
4JI5|1|A|A|109
4JI5|1|A|C|110
4JI5|1|A|G|111
4JI5|1|A|G|112
4JI5|1|A|G|113
*
4JI5|1|A|C|314
4JI5|1|A|A|315
4JI5|1|A|G|316
*
4JI5|1|A|C|337
4JI5|1|A|A|338
4JI5|1|A|C|339
*
4JI5|1|A|G|350
4JI5|1|A|G|351
4JI5|1|A|C|352
4JI5|1|A|A|353
4JI5|1|A|G|354
4JI5|1|A|C|355

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16

Chain T

RIBOSOMAL PROTEIN S20