J5_4KZY_003

3D structure

PDB id

4KZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with eIF1 and eIF1A.

Experimental method

X-RAY DIFFRACTION

Resolution

7.01 Å

Loop

Sequence

GUCGCUCGCUCCUCUCCUACUU*AUGCCGACGGCG*CGUG*CCG*CGACC

Length

46 nucleotides

Bulged bases

4KZY|1|i|G|126, 4KZY|1|i|U|128, 4KZY|1|i|C|129, 4KZY|1|i|G|130, 4KZY|1|i|C|131, 4KZY|1|i|U|132, 4KZY|1|i|C|133, 4KZY|1|i|C|134, 4KZY|1|i|U|135, 4KZY|1|i|C|136, 4KZY|1|i|U|137, 4KZY|1|i|C|138, 4KZY|1|i|C|139, 4KZY|1|i|U|140, 4KZY|1|i|C|142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4KZY|1|i|G|123
4KZY|1|i|U|124
4KZY|1|i|C|125
4KZY|1|i|G|126
4KZY|1|i|C|127
4KZY|1|i|U|128
4KZY|1|i|C|129
4KZY|1|i|G|130
4KZY|1|i|C|131
4KZY|1|i|U|132
4KZY|1|i|C|133
4KZY|1|i|C|134
4KZY|1|i|U|135
4KZY|1|i|C|136
4KZY|1|i|U|137
4KZY|1|i|C|138
4KZY|1|i|C|139
4KZY|1|i|U|140
4KZY|1|i|A|141
4KZY|1|i|C|142
4KZY|1|i|U|143
4KZY|1|i|U|144
*
4KZY|1|i|A|175
4KZY|1|i|U|176
4KZY|1|i|G|177
4KZY|1|i|C|178
4KZY|1|i|C|179
4KZY|1|i|G|180
4KZY|1|i|A|181
4KZY|1|i|C|182
4KZY|1|i|G|183
4KZY|1|i|G|184
4KZY|1|i|C|185
4KZY|1|i|G|186
*
4KZY|1|i|C|209
4KZY|1|i|G|210
4KZY|1|i|U|211
4KZY|1|i|G|212
*
4KZY|1|i|C|301
4KZY|1|i|C|302
4KZY|1|i|G|303
*
4KZY|1|i|C|327
4KZY|1|i|G|328
4KZY|1|i|A|329
4KZY|1|i|C|330
4KZY|1|i|C|331

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain E

40S Ribosomal Protein S4X

Chain G

40S Ribosomal Protein S6

Chain I

40S Ribosomal Protein S8