Loop J5_4KZZ

3D structure

PDB id: 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
Experimental method: X-RAY DIFFRACTION
Resolution: 7.03 Å

Loop

Sequence: GUCGCUCGCUCCUCUCCUACUU*AUGCCGACGGCG*CGUG*CCGAU*ACGACC
Length: 49 nucleotides
Bulged bases: 4KZZ|1|i|G|126, 4KZZ|1|i|U|128, 4KZZ|1|i|C|129, 4KZZ|1|i|G|130, 4KZZ|1|i|C|131, 4KZZ|1|i|U|132, 4KZZ|1|i|C|133, 4KZZ|1|i|C|134, 4KZZ|1|i|U|135, 4KZZ|1|i|C|136, 4KZZ|1|i|U|137, 4KZZ|1|i|C|138, 4KZZ|1|i|C|139, 4KZZ|1|i|C|142
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4KZZ|1|i|G|123
4KZZ|1|i|U|124
4KZZ|1|i|C|125
4KZZ|1|i|G|126
4KZZ|1|i|C|127
4KZZ|1|i|U|128
4KZZ|1|i|C|129
4KZZ|1|i|G|130
4KZZ|1|i|C|131
4KZZ|1|i|U|132
4KZZ|1|i|C|133
4KZZ|1|i|C|134
4KZZ|1|i|U|135
4KZZ|1|i|C|136
4KZZ|1|i|U|137
4KZZ|1|i|C|138
4KZZ|1|i|C|139
4KZZ|1|i|U|140
4KZZ|1|i|A|141
4KZZ|1|i|C|142
4KZZ|1|i|U|143
4KZZ|1|i|U|144
*
4KZZ|1|i|A|175
4KZZ|1|i|U|176
4KZZ|1|i|G|177
4KZZ|1|i|C|178
4KZZ|1|i|C|179
4KZZ|1|i|G|180
4KZZ|1|i|A|181
4KZZ|1|i|C|182
4KZZ|1|i|G|183
4KZZ|1|i|G|184
4KZZ|1|i|C|185
4KZZ|1|i|G|186
*
4KZZ|1|i|C|209
4KZZ|1|i|G|210
4KZZ|1|i|U|211
4KZZ|1|i|G|212
*
4KZZ|1|i|C|301
4KZZ|1|i|C|302
4KZZ|1|i|G|303
4KZZ|1|i|A|304
4KZZ|1|i|U|305
*
4KZZ|1|i|A|326
4KZZ|1|i|C|327
4KZZ|1|i|G|328
4KZZ|1|i|A|329
4KZZ|1|i|C|330
4KZZ|1|i|C|331

Current chains

Chain i: 18S Ribosomal RNA

Nearby chains

Chain E: 40S Ribosomal Protein S4X
Chain G: 40S Ribosomal Protein S6
Chain I: 40S Ribosomal Protein S8

J5_4KZZ_004