J5_4L47_004

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4L47|1|RA|U|271|||C, 4L47|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4L47|1|RA|C|268
4L47|1|RA|U|269
4L47|1|RA|A|270
4L47|1|RA|A|270|||A
4L47|1|RA|A|270|||B
4L47|1|RA|C|270|||C
*
4L47|1|RA|G|270|||W
4L47|1|RA|G|270|||X
4L47|1|RA|G|270|||Y
4L47|1|RA|U|270|||Z
4L47|1|RA|C|271|||A
4L47|1|RA|G|271|||B
4L47|1|RA|U|271|||C
4L47|1|RA|G|271
*
4L47|1|RA|C|366
4L47|1|RA|G|370
4L47|1|RA|A|371
4L47|1|RA|G|372
4L47|1|RA|U|373
4L47|1|RA|A|374
4L47|1|RA|C|375
*
4L47|1|RA|G|399
4L47|1|RA|G|400
4L47|1|RA|A|401
4L47|1|RA|A|402
4L47|1|RA|U|403
4L47|1|RA|C|404
4L47|1|RA|U|405
4L47|1|RA|G|406
*
4L47|1|RA|U|421
4L47|1|RA|A|422
4L47|1|RA|A|423
4L47|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9