3D structure

PDB id
4LFA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG
Length
28 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4LFA_001 not in the Motif Atlas
Homologous match to J5_6CZR_007
Geometric discrepancy: 0.1161
The information below is about J5_6CZR_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4LFA|1|A|C|36
4LFA|1|A|U|37
4LFA|1|A|G|38
4LFA|1|A|G|39
*
4LFA|1|A|C|403
4LFA|1|A|U|404
4LFA|1|A|U|405
4LFA|1|A|G|406
*
4LFA|1|A|C|436
4LFA|1|A|U|437
4LFA|1|A|G|438
4LFA|1|A|A|439
4LFA|1|A|A|440
4LFA|1|A|C|442
4LFA|1|A|C|443
*
4LFA|1|A|G|491
4LFA|1|A|G|492
4LFA|1|A|G|494
4LFA|1|A|U|495
4LFA|1|A|A|496
4LFA|1|A|A|497
4LFA|1|A|U|498
4LFA|1|A|A|499
4LFA|1|A|G|500
*
4LFA|1|A|C|545
4LFA|1|A|G|546
4LFA|1|A|A|547
4LFA|1|A|G|548

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
ribosomal protein S4
Chain L
ribosomal protein S12

Coloring options:


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