J5_4LFB_001

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_42859.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-F-F-cWW-tSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

4LFB|1|A|C|36
4LFB|1|A|U|37
4LFB|1|A|G|38
4LFB|1|A|G|39
*
4LFB|1|A|C|403
4LFB|1|A|U|404
4LFB|1|A|U|405
4LFB|1|A|G|406
*
4LFB|1|A|C|436
4LFB|1|A|U|437
4LFB|1|A|G|438
4LFB|1|A|A|439
4LFB|1|A|A|440
4LFB|1|A|C|442
*
4LFB|1|A|G|492
4LFB|1|A|G|494
4LFB|1|A|U|495
4LFB|1|A|A|496
4LFB|1|A|A|497
4LFB|1|A|U|498
4LFB|1|A|A|499
4LFB|1|A|G|500
*
4LFB|1|A|C|545
4LFB|1|A|G|546
4LFB|1|A|A|547
4LFB|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain L

ribosomal protein S12