J5_4LFB_002

3D structure

PDB id

4LFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4LFB|1|A|A|109, 4LFB|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4LFB|1|A|C|58
4LFB|1|A|A|59
4LFB|1|A|A|60
4LFB|1|A|G|61
*
4LFB|1|A|C|106
4LFB|1|A|G|107
4LFB|1|A|G|108
4LFB|1|A|A|109
4LFB|1|A|C|110
4LFB|1|A|G|111
4LFB|1|A|G|112
4LFB|1|A|G|113
*
4LFB|1|A|C|314
4LFB|1|A|A|315
4LFB|1|A|G|316
*
4LFB|1|A|C|337
4LFB|1|A|A|338
4LFB|1|A|C|339
*
4LFB|1|A|G|350
4LFB|1|A|G|351
4LFB|1|A|C|352
4LFB|1|A|A|353
4LFB|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20