J5_4P6F_004
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG
- Length
- 33 nucleotides
- Bulged bases
- 4P6F|1|RA|U|271|||C, 4P6F|1|RA|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4P6F|1|RA|C|268
4P6F|1|RA|U|269
4P6F|1|RA|A|270
4P6F|1|RA|A|270|||A
4P6F|1|RA|A|270|||B
4P6F|1|RA|C|270|||C
*
4P6F|1|RA|G|270|||W
4P6F|1|RA|G|270|||X
4P6F|1|RA|G|270|||Y
4P6F|1|RA|U|270|||Z
4P6F|1|RA|C|271|||A
4P6F|1|RA|G|271|||B
4P6F|1|RA|U|271|||C
4P6F|1|RA|G|271
*
4P6F|1|RA|C|366
4P6F|1|RA|G|370
4P6F|1|RA|A|371
4P6F|1|RA|G|372
4P6F|1|RA|U|373
4P6F|1|RA|A|374
4P6F|1|RA|C|375
*
4P6F|1|RA|G|399
4P6F|1|RA|G|400
4P6F|1|RA|A|401
4P6F|1|RA|A|402
4P6F|1|RA|U|403
4P6F|1|RA|C|404
4P6F|1|RA|U|405
4P6F|1|RA|G|406
*
4P6F|1|RA|U|421
4P6F|1|RA|A|422
4P6F|1|RA|A|423
4P6F|1|RA|G|424
Current chains
- Chain RA
- 23S ribosomal RNA
Nearby chains
- Chain R1
- 50S ribosomal protein L28
- Chain RI
- 50S ribosomal protein L9
Coloring options: