J5_4P6F_018
3D structure
- PDB id
- 4P6F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the peptolide 12C bound to bacterial ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4P6F|1|YA|A|2448, 4P6F|1|YA|U|2449, 4P6F|1|YA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4P6F|1|YA|A|2057
4P6F|1|YA|A|2058
4P6F|1|YA|A|2059
4P6F|1|YA|A|2060
4P6F|1|YA|G|2061
4P6F|1|YA|A|2062
4P6F|1|YA|C|2063
4P6F|1|YA|C|2064
*
4P6F|1|YA|G|2446
4P6F|1|YA|G|2447
4P6F|1|YA|A|2448
4P6F|1|YA|U|2449
4P6F|1|YA|A|2450
4P6F|1|YA|A|2451
4P6F|1|YA|C|2452
4P6F|1|YA|A|2453
*
4P6F|1|YA|U|2500
4P6F|1|YA|C|2501
4P6F|1|YA|G|2502
4P6F|1|YA|A|2503
4P6F|1|YA|U|2504
4P6F|1|YA|G|2505
4P6F|1|YA|U|2506
4P6F|1|YA|C|2507
*
4P6F|1|YA|G|2582
4P6F|1|YA|G|2583
4P6F|1|YA|U|2584
4P6F|1|YA|U|2585
4P6F|1|YA|C|2586
4P6F|1|YA|A|2587
4P6F|1|YA|G|2588
*
4P6F|1|YA|C|2606
4P6F|1|YA|G|2607
4P6F|1|YA|G|2608
4P6F|1|YA|U|2609
4P6F|1|YA|C|2610
4P6F|1|YA|U|2611
Current chains
- Chain YA
- 23S ribosomal RNA
Nearby chains
- Chain XV
- Transfer RNA; tRNA
- Chain XY
- Transfer RNA; tRNA
- Chain Y0
- 50S ribosomal protein L27
- Chain Y5
- 50S ribosomal protein L32
- Chain YD
- 50S ribosomal protein L2
- Chain YE
- 50S ribosomal protein L3
- Chain YF
- 50S ribosomal protein L4
- Chain YW
- 50S ribosomal protein L22
- Chain Z8
- T17-GLY-GLY-PRO-LYS-LYS-LYS-LYS-LYS-VAL-GLY-GLY
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