3D structure

PDB id
4P8Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Speciation of a group I intron into a lariat capping ribozyme
Experimental method
X-RAY DIFFRACTION
Resolution
3.85 Å

Loop

Sequence
GGUUGAACACUUAAUUGGGUUAAAA*UC*GCGACAG*CGU*AGCAUC
Length
43 nucleotides
Bulged bases
4P8Z|1|A|A|66, 4P8Z|1|A|A|67, 4P8Z|1|A|C|167, 4P8Z|1|A|A|168, 4P8Z|1|A|U|169
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4P8Z|1|A|G|45
4P8Z|1|A|G|46
4P8Z|1|A|U|47
4P8Z|1|A|U|48
4P8Z|1|A|G|49
4P8Z|1|A|A|50
4P8Z|1|A|A|51
4P8Z|1|A|C|52
4P8Z|1|A|A|53
4P8Z|1|A|C|54
4P8Z|1|A|U|55
4P8Z|1|A|U|56
4P8Z|1|A|A|57
4P8Z|1|A|A|58
4P8Z|1|A|U|59
4P8Z|1|A|U|60
4P8Z|1|A|G|61
4P8Z|1|A|G|62
4P8Z|1|A|G|63
4P8Z|1|A|U|64
4P8Z|1|A|U|65
4P8Z|1|A|A|66
4P8Z|1|A|A|67
4P8Z|1|A|A|68
4P8Z|1|A|A|69
*
4P8Z|1|A|U|97
4P8Z|1|A|C|98
*
4P8Z|1|A|G|105
4P8Z|1|A|C|106
4P8Z|1|A|G|107
4P8Z|1|A|A|108
4P8Z|1|A|C|109
4P8Z|1|A|A|110
4P8Z|1|A|G|111
*
4P8Z|1|A|C|152
4P8Z|1|A|G|153
4P8Z|1|A|U|154
*
4P8Z|1|A|A|165
4P8Z|1|A|G|166
4P8Z|1|A|C|167
4P8Z|1|A|A|168
4P8Z|1|A|U|169
4P8Z|1|A|C|170

Current chains

Chain A
Didymium iridis partial IGS, 18S rRNA gene, I-DirI gene and partial ITS1

Nearby chains

No other chains within 10Å

Coloring options:

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