J5_4P8Z_001
3D structure
- PDB id
- 4P8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Speciation of a group I intron into a lariat capping ribozyme
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.85 Å
Loop
- Sequence
- GGUUGAACACUUAAUUGGGUUAAAA*UC*GCGACAG*CGU*AGCAUC
- Length
- 43 nucleotides
- Bulged bases
- 4P8Z|1|A|A|66, 4P8Z|1|A|A|67, 4P8Z|1|A|C|167, 4P8Z|1|A|A|168, 4P8Z|1|A|U|169
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4P8Z|1|A|G|45
4P8Z|1|A|G|46
4P8Z|1|A|U|47
4P8Z|1|A|U|48
4P8Z|1|A|G|49
4P8Z|1|A|A|50
4P8Z|1|A|A|51
4P8Z|1|A|C|52
4P8Z|1|A|A|53
4P8Z|1|A|C|54
4P8Z|1|A|U|55
4P8Z|1|A|U|56
4P8Z|1|A|A|57
4P8Z|1|A|A|58
4P8Z|1|A|U|59
4P8Z|1|A|U|60
4P8Z|1|A|G|61
4P8Z|1|A|G|62
4P8Z|1|A|G|63
4P8Z|1|A|U|64
4P8Z|1|A|U|65
4P8Z|1|A|A|66
4P8Z|1|A|A|67
4P8Z|1|A|A|68
4P8Z|1|A|A|69
*
4P8Z|1|A|U|97
4P8Z|1|A|C|98
*
4P8Z|1|A|G|105
4P8Z|1|A|C|106
4P8Z|1|A|G|107
4P8Z|1|A|A|108
4P8Z|1|A|C|109
4P8Z|1|A|A|110
4P8Z|1|A|G|111
*
4P8Z|1|A|C|152
4P8Z|1|A|G|153
4P8Z|1|A|U|154
*
4P8Z|1|A|A|165
4P8Z|1|A|G|166
4P8Z|1|A|C|167
4P8Z|1|A|A|168
4P8Z|1|A|U|169
4P8Z|1|A|C|170
Current chains
- Chain A
- Didymium iridis partial IGS, 18S rRNA gene, I-DirI gene and partial ITS1
Nearby chains
No other chains within 10ÅColoring options: