J5_4TUE_004

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4TUE|1|RA|U|271|||C, 4TUE|1|RA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4TUE|1|RA|C|268
4TUE|1|RA|U|269
4TUE|1|RA|A|270
4TUE|1|RA|A|270|||A
4TUE|1|RA|A|270|||B
4TUE|1|RA|C|270|||C
*
4TUE|1|RA|G|270|||W
4TUE|1|RA|G|270|||X
4TUE|1|RA|G|270|||Y
4TUE|1|RA|U|270|||Z
4TUE|1|RA|C|271|||A
4TUE|1|RA|G|271|||B
4TUE|1|RA|U|271|||C
4TUE|1|RA|G|271
*
4TUE|1|RA|C|366
4TUE|1|RA|G|370
4TUE|1|RA|A|371
4TUE|1|RA|G|372
4TUE|1|RA|U|373
4TUE|1|RA|A|374
4TUE|1|RA|C|375
*
4TUE|1|RA|G|399
4TUE|1|RA|G|400
4TUE|1|RA|A|401
4TUE|1|RA|A|402
4TUE|1|RA|U|403
4TUE|1|RA|C|404
4TUE|1|RA|U|405
4TUE|1|RA|G|406
*
4TUE|1|RA|U|421
4TUE|1|RA|A|422
4TUE|1|RA|A|423
4TUE|1|RA|G|424

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9