J5_4U1U_017

3D structure

PDB id

4U1U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

4U1U|1|DA|A|2062, 4U1U|1|DA|A|2448, 4U1U|1|DA|U|2449, 4U1U|1|DA|U|2585, 4U1U|1|DA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U1U|1|DA|G|2057
4U1U|1|DA|A|2058
4U1U|1|DA|A|2059
4U1U|1|DA|A|2060
4U1U|1|DA|G|2061
4U1U|1|DA|A|2062
4U1U|1|DA|C|2063
4U1U|1|DA|C|2064
*
4U1U|1|DA|G|2446
4U1U|1|DA|G|2447
4U1U|1|DA|A|2448
4U1U|1|DA|U|2449
4U1U|1|DA|A|2450
4U1U|1|DA|A|2451
4U1U|1|DA|C|2452
4U1U|1|DA|A|2453
*
4U1U|1|DA|U|2500
4U1U|1|DA|C|2501
4U1U|1|DA|G|2502
4U1U|1|DA|A|2503
4U1U|1|DA|U|2504
4U1U|1|DA|G|2505
4U1U|1|DA|U|2506
*
4U1U|1|DA|G|2583
4U1U|1|DA|U|2584
4U1U|1|DA|U|2585
4U1U|1|DA|U|2586
4U1U|1|DA|A|2587
4U1U|1|DA|G|2588
*
4U1U|1|DA|C|2606
4U1U|1|DA|G|2607
4U1U|1|DA|G|2608
4U1U|1|DA|U|2609
4U1U|1|DA|C|2610
4U1U|1|DA|C|2611

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain D6

Quinupristin

Chain DC

50S ribosomal protein L2

Chain DD

50S ribosomal protein L3

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15

Chain DM

50S ribosomal protein L16