J5_4U1V_010

3D structure

PDB id

4U1V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4U1V_010 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0716

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4U1V|1|CA|C|36
4U1V|1|CA|U|37
4U1V|1|CA|G|38
4U1V|1|CA|G|39
*
4U1V|1|CA|C|403
4U1V|1|CA|G|404
4U1V|1|CA|U|405
4U1V|1|CA|G|406
*
4U1V|1|CA|C|436
4U1V|1|CA|U|437
4U1V|1|CA|U|438
4U1V|1|CA|U|439
4U1V|1|CA|C|440
*
4U1V|1|CA|G|497
4U1V|1|CA|A|498
4U1V|1|CA|A|499
4U1V|1|CA|G|500
*
4U1V|1|CA|C|545
4U1V|1|CA|A|546
4U1V|1|CA|A|547
4U1V|1|CA|G|548

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12