J5_4U20_001

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4U20_001 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0599

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4U20|1|AA|C|36
4U20|1|AA|U|37
4U20|1|AA|G|38
4U20|1|AA|G|39
*
4U20|1|AA|C|403
4U20|1|AA|G|404
4U20|1|AA|U|405
4U20|1|AA|G|406
*
4U20|1|AA|C|436
4U20|1|AA|U|437
4U20|1|AA|U|438
4U20|1|AA|U|439
4U20|1|AA|C|440
*
4U20|1|AA|G|497
4U20|1|AA|A|498
4U20|1|AA|A|499
4U20|1|AA|G|500
*
4U20|1|AA|C|545
4U20|1|AA|A|546
4U20|1|AA|A|547
4U20|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12